DSI Studio
Description DSI Studio is a tractography software for diffusion MRI, fiber tracking, and connectome analysis. The software maps brain connections and links the results to neuropsychological disorders. It is a… Read more »
Category: Softs
CUDA
Description CUDA (Compute Unified Device Architecture) is a parallel computing platform developed by NVIDIA. It enables code execution on GPUs through an extension of C/C++ and a set of low-level… Read more »
Hierarchical Data Format 5
Description HDF5 (Hierarchical Data Format version 5) is a file format and software library designed to store and organize large amounts of complex data. Setup the environment Tutorial Documentation
Amber
Description Amber is a suite of biomolecular simulation programs. The term “Amber” refers to two things. First, it is a set of molecular mechanical force fields for the simulation of… Read more »
ANTs
AddNoiseToImage CreateTiledMosaic ANTS CreateWarpedGridImage antsAffineInitializer DenoiseImage antsAI DeNrrd antsAlignOrigin ExtractRegionFromImage antsApplyTransforms ExtractRegionFromImageByMask antsApplyTransformsToPoints ExtractSliceFromImage antsASLProcessing.sh FitBSplineToPoints antsAtroposN4.sh etConnectedComponentsFeatureImages antsBOLDNetworkAnalysis.R ImageCompare antsBrainExtraction.sh ImageIntensityStatistics antsCorticalThickness.sh ImageMath ANTSIntegrateVectorField ImageSetStatistics ANTSIntegrateVelocityField iMath antsIntermodalityIntrasubject.sh KellyKapowski… Read more »
apptainer
Appendix
Blender
Batch mode blender -b your_scene.blend -o video_output.avi -s 0 -e 250 -t 16 -a
Boost
ml boost/1.89.0
cmake
ml utils/cmake # alias 4.1.2 versionouml utils/cmake/4.1.1