Amber
Description Amber is a suite of biomolecular simulation programs. The term “Amber” refers to two things. First, it is a set of molecular mechanical force fields for the simulation of… Read more »
Author Archives: Jean-Baptiste Hoock
Autoconf
Description Autoconf is a tool that automatically generates portable configuration scripts for software. It analyzes the system environment (compiler, libraries, available options, etc.) to create a configure script that allows… Read more »
Automake
Description Automake is a tool that automatically generates portable Makefile files for software. It uses Makefile templates (called Makefile.am) and creates standard Makefiles that comply with GNU conventions and can… Read more »
COMSOL Multiphysics
Description COMSOL Multiphysics is a numerical simulation software based on the Finite Element Method (FEM), used to model and analyze multidisciplinary physical phenomena. It enables the simulation of interactions across… Read more »
CPLEX
Description CPLEX Optimizer provides flexible and high-performance mathematical programming solvers for linear programming, mixed-integer programming, constraint programming, and quadratic constraint programming problems. These solvers include a distributed parallel algorithm for… Read more »
CUDA
Description CUDA (Compute Unified Device Architecture) is a parallel computing platform developed by NVIDIA. It enables code execution on GPUs through an extension of C/C++ and a set of low-level… Read more »
DSI Studio
Description DSI Studio is a tractography software for diffusion MRI, fiber tracking, and connectome analysis. The software maps brain connections and links the results to neuropsychological disorders. It is a… Read more »
Eigen
Description Eigen is an open-source C++ library dedicated to matrix computations, linear algebra, and numerical operations. It provides efficient data structures and algorithms for manipulating vectors, matrices, matrix decompositions, linear… Read more »
FFTW
Description FFTW is an open-source C library dedicated to the fast computation of the discrete Fourier transform (DFT) in one or multiple dimensions. It provides functions to compute complex and… Read more »
FreeSurfer
Description FreeSurfer is a software package for neuroanatomical analysis of structural MRI, brain segmentation, and cortical surface reconstruction. It automatically extracts cortical thickness, subcortical structure volumes, and cortical morphology. It… Read more »